CellEncoder.DAE

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class DAE(subset: bool = True, path: str = None)

DAE can be used to encode exp of cells.

PARAMETERS:

  • subset (bool, optional) - Use screened gene expression profiles or not. (default: True)

  • path (bool, optional) - Path of DAE_ALL.pt. (default: None)

SHAPES:

  • input: Original features. [batch_size, in_dim]

  • output: Encoded features. [batch_size, ft_dim]

forward(f: torch.Tensor)

  • f (torch.Tensor) - The input of DAE.