How to prepare your own data

The following are detailed tutorials on how to prepare your own data.

Note

If you use data integrated in the library, ignore this section.

Prepare your gene subset

Note

If you want to use the default gene subset or not use the gene subset, or use the cell feature integrated in the library, ignore this section.

You need to prepare a gbk encoding txt file. Each row in the file should be a gene name, The following is an example:

ARHGEF10L
RNF11
GTF2IP1

Prepare your cell data

Note

If you want to use the cell feature integrated in the library, ignore this section.

You need to prepare a csv file with column separators of ,. The first column in the file should be the gene name, the first row should be the cell name. The following is an example:

Gene	CAL120	DMS114	CAL51
A1BG	6.208447	5.02581	5.506955
A1CF	2.981775	2.947547	2.872071
A2M	3.133883	3.335711	3.287678

Prepare your response data

Note

If you want to use the response data integrated in the library, ignore this section.

You need to prepare a csv file with column separators of ,. The first row is the header, the second row to the last row are cell-drug pairs, where the first column is the cell name, the second column is the drug name, and the third column is the drug response. The following is an example:

Cell	Drug	Response
1321N1	AEW541	0.7124
22Rv1	AEW541	1.6723
42-MG-BA	AEW541	1.1852